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krust reviews and mentions
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Feedback on a K-mer counter written in Rust
I’m not a bioinformatician, I’m just a software engineer. I made krust because I wanted to learn Rust. I’ve kept working on it and I’m surprised it has as many as 22 stars on GitHub, from people who seem to be in bioinformatics for the most part. So it seems like it’s somewhat interesting/useful. But I don’t know what would make this more/less useful for a specialist.
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What are you using Rust for?
Been learning Rust by making a k-mer counter — bioinformatics 101 tool for counting the frequency of substrings of length k in DNA data: https://github.com/suchapalaver/krust. Would love feedback.
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I wrote a fast kmer counter in Rust called krust. I would love for people to get use out of it and for me to get feedback! Thanks and all the best!
Adding all suggestions as issues on github ;) https://github.com/suchapalaver/krust/issues/6
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Help needed getting started with concurrency, making use of my cores …
Thanks again for your suggestion. In case you’re interested, I followed up and used rayon in my program: https://github.com/suchapalaver/krust/blob/main/src/lib.rs. All the best!
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A note from our sponsor - InfluxDB
www.influxdata.com | 1 Jun 2024
Stats
suchapalaver/krust is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of krust is Rust.
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