Top 17 C Bioinformatic Projects

• minimap2

  5 1,706 7.6 C

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

Project mention: Ask HN: Comment here about whatever you're passionate about at the moment | news.ycombinator.com | 2023-11-06

Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.

• bwa

  3 1,459 2.7 C

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• seqtk

  8 1,326 5.1 C

  Toolkit for processing sequences in FASTA/Q formats

Project mention: Illumina adapters and quality trimming | /r/bioinformatics | 2023-07-04

seqtk: A lightweight and versatile tool for processing FASTQ and FASTA files. https://github.com/lh3/seqtk

• MMseqs2

  4 1,277 7.7 C

  MMseqs2: ultra fast and sensitive search and clustering suite

  

• htslib

  7 777 8.9 C

  C library for high-throughput sequencing data formats

  

Project mention: Gentoo -Os vs -O3 application startup time? | /r/Gentoo | 2023-06-29

• foldseek

  1 675 9.3 C

  Foldseek enables fast and sensitive comparisons of large structure sets.

  

• bioawk

  8 581 0.0 C

  BWK awk modified for biological data

Project mention: Bioawk: Awk Modified for Biological Data | news.ycombinator.com | 2024-03-31

• SaaSHub

  www.saashub.com featured

  SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

  

• hh-suite

  2 507 0.0 C

  Remote protein homology detection suite.

  

• miniprot

  1 305 5.8 C

  Align proteins to genomes with splicing and frameshift

• kent

  12 209 9.9 C

  UCSC Genome Browser source tree. Stable branch: "beta".

  

• biowasm

  4 191 8.9 C

  WebAssembly modules for genomics

  

Project mention: Biowasm – Run C/C++ genomics tools in the browser | news.ycombinator.com | 2024-03-11

• biofast

  3 175 0.0 C

  Benchmarking programming languages/implementations for common tasks in Bioinformatics

• readfq

  2 164 0.0 C

  Fast multi-line FASTA/Q reader in several programming languages

• MethylDackel

  1 154 3.0 C

  A (mostly) universal methylation extractor for BS-seq experiments.

• libBigWig

  1 71 0.0 C

  A C library for handling bigWig files

• libdna

  2 20 7.4 C

  ♥ Essential Functions for DNA Manipulation

• bam-filter

  1 5 2.4 C

  Use simple expressions to filter a BAM/CRAM file

  

• SaaSHub

  www.saashub.com featured

  SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

  

C Bioinformatics related posts

• Bioawk: Awk Modified for Biological Data

  1 project | news.ycombinator.com | 31 Mar 2024

• Illumina adapters and quality trimming

  2 projects | /r/bioinformatics | 4 Jul 2023

• looking for a tool to filter non-coding regions/excise ORFs from a draft assembly

  2 projects | /r/bioinformatics | 15 Jun 2023

• Help with understanding awk code

  2 projects | /r/bash | 19 May 2023

• Any links to R-scripts for common NGS pipelines?

  2 projects | /r/bioinformatics | 11 May 2023

• Is BioAwk frequently used, or even useful?

  2 projects | /r/bioinformatics | 5 May 2023

• What are the most useful cutting edge tools I should learn for bioinformatics?

  3 projects | /r/bioinformatics | 26 Apr 2023
• A note from our sponsor - SaaSHub
  www.saashub.com | 31 May 2024

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