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Top 8 Nextflow nf-core Projects
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rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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configs
Config files used to define parameters specific to compute environments at different Institutions (by nf-core)
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
Nextflow nf-core related posts
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Point of using Hisat2 build to index reference genomes when working with known genomes mouse/human?
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I used featureCounts to quantify RNA-seq reads and got a low successful alignment percentage. Is this a problem?
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How to know where to align if I have RNAseq data??
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Semi Budget-Friendly High-Thread Count Options?
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How to get NGS programming experience?
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Illumina: can I use it on my laptop?
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What is the preferred way of documenting a Nextflow pipeline?
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A note from our sponsor - InfluxDB
www.influxdata.com | 24 May 2024
Index
What are some of the best open-source nf-core projects in Nextflow? This list will help you:
Project | Stars | |
---|---|---|
1 | rnaseq | 793 |
2 | sarek | 340 |
3 | mag | 182 |
4 | chipseq | 172 |
5 | atacseq | 162 |
6 | eager | 123 |
7 | configs | 78 |
8 | hlatyping | 52 |
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