R Bioinformatics

Open-source R projects categorized as Bioinformatics
Edit details
Topics: R protein-sequences Genomics bioinformatics-pipeline bioconductor
Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured

Top 12 R Bioinformatic Projects

  • dada2

    Accurate sample inference from amplicon data with single nucleotide resolution

  • maftools

    Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • rBLAST

    Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

  • Peptides

    An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

  • protr

    🧬 Toolkit for generating various numerical features of protein sequences

    • Project mention: protr VS seqinr - a user suggested alternative | libhunt.com/r/protr | 2024-05-05

  • covid19-event-risk-planner

    COVID19 risk planner R-Shiny application

  • biomisc_R

    command line bioinformatic scripts written in R

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo

  • rhmmer

    Simple R utilities for working with HMMER

  • chromatographR

    Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

  • Baltica

    Baltica: integrated differential junction usage

  • drugfindR

    Repository holding the code for the drugfindR R package

  • ermineR

    R wrapper for ermineJ

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

R Bioinformatics related posts

  • protr VS seqinr - a user suggested alternative

    2 projects | 5 May 2024

  • Washington state - no case updates since DOH doesn't publish on Tuesdays, Thursdays and weekends and holidays - 10/3/2022 Case Updates

    1 project | /r/CoronavirusWA | 4 Oct 2022

  • Caught Covid at the National 9/24/22

    1 project | /r/rva | 1 Oct 2022

  • Monthly Megathread for COVID-19 - August 2022

    1 project | /r/weddingplanning | 31 Jul 2022

  • Us this week

    1 project | /r/UniversityOfHouston | 17 Jul 2022

  • New York City reaches medium risk alert level for COVID

    1 project | /r/Coronavirus | 3 May 2022

  • PSA: COVID still widespread in St. Louis despite minuscule reported cases

    1 project | /r/StLouis | 27 Apr 2022
  • A note from our sponsor - SaaSHub
    www.saashub.com | 6 May 2024
    SaaSHub helps you find the best software and product alternatives Learn more →

Index

What are some of the best open-source Bioinformatic projects in R? This list will help you:

Project Stars
1 dada2 452
2 maftools 417
3 rBLAST 100
4 Peptides 74
5 protr 51
6 covid19-event-risk-planner 47
7 biomisc_R 23
8 rhmmer 14
9 chromatographR 12
10 Baltica 7
11 drugfindR 7
12 ermineR 6

Sponsored
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com