R Bioinformatics

Open-source R projects categorized as Bioinformatics
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Topics: R protein-sequences bioinformatics-pipeline Genomics sequence-analysis
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Top 13 R Bioinformatic Projects

  • dada2

    Accurate sample inference from amplicon data with single nucleotide resolution

  • maftools

    Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

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  • rBLAST

    Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

  • Peptides

    An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

  • protr

    🧬 Toolkit for generating various numerical features of protein sequences

    • Project mention: protr VS seqinr - a user suggested alternative | libhunt.com/r/protr | 2024-05-05

  • covid19-event-risk-planner

    COVID19 risk planner R-Shiny application

  • biomisc_R

    command line bioinformatic scripts written in R

  • SaaSHub

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  • rhmmer

    Simple R utilities for working with HMMER

  • chromatographR

    Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

  • drugfindR

    Repository holding the code for the drugfindR R package

  • Baltica

    Baltica: integrated differential junction usage

  • ermineR

    R wrapper for ermineJ

  • seqinr

    Biological sequences retrieval and analysis

    • Project mention: protr VS seqinr - a user suggested alternative | libhunt.com/r/protr | 2024-05-05
NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

R Bioinformatics related posts

  • protr VS seqinr - a user suggested alternative

    2 projects | 5 May 2024

  • Washington state - no case updates since DOH doesn't publish on Tuesdays, Thursdays and weekends and holidays - 10/3/2022 Case Updates

    1 project | /r/CoronavirusWA | 4 Oct 2022

  • Caught Covid at the National 9/24/22

    1 project | /r/rva | 1 Oct 2022

  • Monthly Megathread for COVID-19 - August 2022

    1 project | /r/weddingplanning | 31 Jul 2022

  • Us this week

    1 project | /r/UniversityOfHouston | 17 Jul 2022

  • New York City reaches medium risk alert level for COVID

    1 project | /r/Coronavirus | 3 May 2022

  • PSA: COVID still widespread in St. Louis despite minuscule reported cases

    1 project | /r/StLouis | 27 Apr 2022
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 1 Jun 2024
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Index

What are some of the best open-source Bioinformatic projects in R? This list will help you:

Project Stars
1 dada2 455
2 maftools 422
3 rBLAST 101
4 Peptides 75
5 protr 51
6 covid19-event-risk-planner 47
7 biomisc_R 22
8 rhmmer 15
9 chromatographR 12
10 drugfindR 7
11 Baltica 7
12 ermineR 6
13 seqinr 2

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