Nextflow Bioinformatics

Open-source Nextflow projects categorized as Bioinformatics
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Topics: nextflow nf-core Workflow Pipeline Annotation
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Top 4 Nextflow Bioinformatic Projects

  • sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  • mag

    Assembly and binning of metagenomes

  • InfluxDB

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  • eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  • configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Nextflow Bioinformatics related posts

  • Recommendations for software or online resources

    1 project | /r/bioinformatics | 29 Apr 2023

  • Best somatic variant callers?

    1 project | /r/bioinformatics | 9 Feb 2023

  • GATK4 automated pipelines in existence?

    2 projects | /r/bioinformatics | 11 Mar 2022

  • Workflow Question

    1 project | /r/bioinformatics | 9 Jul 2021

  • Why does it feels impossible to set up github nextflow pipeline without a root?

    1 project | /r/bioinformatics | 7 Jul 2021

  • aws batch keeps the "Desired vCPUs" high long after they should be reduced

    1 project | /r/aws | 15 Mar 2021
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 1 Jun 2024
    Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

Index

What are some of the best open-source Bioinformatic projects in Nextflow? This list will help you:

Project Stars
1 sarek 343
2 mag 182
3 eager 123
4 configs 79

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